IL_9YPO_079
3D structure
- PDB id
- 9YPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 9YPO|1|5|A|1960
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPO|1|5|U|1957
9YPO|1|5|A|1958
9YPO|1|5|U|1959
9YPO|1|5|A|1960
9YPO|1|5|G|1961
9YPO|1|5|A|1962
9YPO|1|5|C|1963
9YPO|1|5|A|1964
9YPO|1|5|G|1965
*
9YPO|1|5|C|2022
9YPO|1|5|C|2023
9YPO|1|5|G|2024
9YPO|1|5|A|2025
9YPO|1|5|A|2026
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain S
- 60S ribosomal protein L18a
- Chain m
- Ubiquitin-ribosomal protein eL40 fusion protein
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