IL_9YPO_098
3D structure
- PDB id
- 9YPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 9YPO|1|5|U|2661, 9YPO|1|5|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPO|1|5|U|2656
9YPO|1|5|G|2657
9YPO|1|5|G|2658
9YPO|1|5|A|2659
9YPO|1|5|A|2660
9YPO|1|5|U|2661
9YPO|1|5|G|2662
*
9YPO|1|5|C|2672
9YPO|1|5|G|2673
9YPO|1|5|A|2674
9YPO|1|5|G|2675
9YPO|1|5|A|2676
9YPO|1|5|G|2677
9YPO|1|5|A|2678
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain NN
- Ribosomal protein S13
- Chain R
- Ribosomal protein L19
- Chain Z
- 60S ribosomal protein L27
- Chain c
- eL30
- Chain g
- Large ribosomal subunit protein eL34
- Chain p
- eL43
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