IL_9YPO_190

3D structure

PDB id

9YPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIa

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9YPO|1|9|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPO|1|9|G|145
9YPO|1|9|G|146
9YPO|1|9|A|147
9YPO|1|9|U|148
9YPO|1|9|A|149
9YPO|1|9|A|150
9YPO|1|9|C|151
*
9YPO|1|9|G|167
9YPO|1|9|C|168
9YPO|1|9|U|169
9YPO|1|9|A|170
9YPO|1|9|A|171
9YPO|1|9|U|172
9YPO|1|9|A|173
9YPO|1|9|C|174

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain W

eL24

Chain YY

40S ribosomal protein S24