IL_9YPS_077
3D structure
- PDB id
- 9YPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 9YPS|1|5|U|1930, 9YPS|1|5|C|1931, 9YPS|1|5|G|2055, 9YPS|1|5|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPS|1|5|C|1926
9YPS|1|5|U|1927
9YPS|1|5|C|1928
9YPS|1|5|A|1929
9YPS|1|5|U|1930
9YPS|1|5|C|1931
9YPS|1|5|A|1932
9YPS|1|5|G|1933
*
9YPS|1|5|C|2053
9YPS|1|5|U|2054
9YPS|1|5|G|2055
9YPS|1|5|G|2056
9YPS|1|5|A|2057
9YPS|1|5|G|2058
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L9
- Chain M
- 60S ribosomal protein L14
- Chain O
- Large ribosomal subunit protein uL13
- Chain S
- 60S ribosomal protein L18a
- Chain m
- Ubiquitin-ribosomal protein eL40 fusion protein
Coloring options: