IL_9YPS_097

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

9YPS|1|5|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPS_097 not in the Motif Atlas

Homologous match to IL_8GLP_099

Geometric discrepancy: 0.1797

The information below is about IL_8GLP_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.4

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

9YPS|1|5|C|2646
9YPS|1|5|A|2647
9YPS|1|5|G|2648
*
9YPS|1|5|C|2685
9YPS|1|5|G|2686
9YPS|1|5|U|2687
9YPS|1|5|G|2688

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain g

Large ribosomal subunit protein eL34