IL_9YPS_116

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPS_116 not in the Motif Atlas

Geometric match to IL_8GLP_124

Geometric discrepancy: 0.0552

The information below is about IL_8GLP_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24886.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

13

Unit IDs

9YPS|1|5|G|3780
9YPS|1|5|C|3781
*
9YPS|1|5|G|3811
9YPS|1|5|C|3812
9YPS|1|5|A|3813
9YPS|1|5|U|3814

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 13

Transfer RNA; tRNA

Chain n

eL41