IL_8GLP_124

3D structure

PDB id

8GLP (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.67 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8GLP_124 not in the Motif Atlas

Geometric match to IL_5TBW_089

Geometric discrepancy: 0.0971

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8GLP|1|L5|G|3780
8GLP|1|L5|C|3781
*
8GLP|1|L5|G|3811
8GLP|1|L5|C|3812
8GLP|1|L5|A|3813
8GLP|1|L5|U|3814

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain Pt

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA