IL_9YPS_160
3D structure
- PDB id
- 9YPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUCCC*GGUC
- Length
- 9 nucleotides
- Bulged bases
- 9YPS|1|5|C|4772
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPS_160 not in the Motif Atlas
- Geometric match to IL_3WBM_002
- Geometric discrepancy: 0.3883
- The information below is about IL_3WBM_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_37443.2
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9YPS|1|5|G|4769
9YPS|1|5|U|4770
9YPS|1|5|C|4771
9YPS|1|5|C|4772
9YPS|1|5|C|4773
*
9YPS|1|5|G|4862
9YPS|1|5|G|4863
9YPS|1|5|U|4864
9YPS|1|5|C|4865
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain H
- 60S ribosomal protein L9
- Chain O
- Large ribosomal subunit protein uL13
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