IL_9YPS_190

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9YPS|1|9|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPS|1|9|G|145
9YPS|1|9|G|146
9YPS|1|9|A|147
9YPS|1|9|U|148
9YPS|1|9|A|149
9YPS|1|9|A|150
9YPS|1|9|C|151
*
9YPS|1|9|G|167
9YPS|1|9|C|168
9YPS|1|9|U|169
9YPS|1|9|A|170
9YPS|1|9|A|171
9YPS|1|9|U|172
9YPS|1|9|A|173
9YPS|1|9|C|174

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain W

eL24

Chain YY

40S ribosomal protein S24