IL_9YPS_197

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

9YPS|1|9|U|368, 9YPS|1|9|C|369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPS_197 not in the Motif Atlas

Homologous match to IL_9PN5_160

Geometric discrepancy: 0.4031

The information below is about IL_9PN5_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01372.3

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

9YPS|1|9|U|366
9YPS|1|9|U|367
9YPS|1|9|U|368
9YPS|1|9|C|369
9YPS|1|9|G|370
9YPS|1|9|A|371
*
9YPS|1|9|U|393
9YPS|1|9|G|394

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain II

40S ribosomal protein S8

Chain LL

Ribosomal protein S11

Chain R

Ribosomal protein L19