IL_9YPS_213
3D structure
- PDB id
- 9YPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPS_213 not in the Motif Atlas
- Homologous match to IL_9PN5_176
- Geometric discrepancy: 0.0807
- The information below is about IL_9PN5_176
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.3
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9YPS|1|9|C|676
9YPS|1|9|G|677
9YPS|1|9|U|678
9YPS|1|9|A|679
9YPS|1|9|G|680
*
9YPS|1|9|U|1025
9YPS|1|9|C|1026
9YPS|1|9|A|1027
9YPS|1|9|A|1028
9YPS|1|9|G|1029
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LL
- Ribosomal protein S11
- Chain NN
- Ribosomal protein S13
- Chain WW
- Ribosomal protein S15a
- Chain XX
- uS12
Coloring options: