IL_9YPS_222

3D structure

PDB id

9YPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

9YPS|1|9|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPS_222 not in the Motif Atlas

Homologous match to IL_9PN5_183

Geometric discrepancy: 0.0753

The information below is about IL_9PN5_183

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9YPS|1|9|G|925
9YPS|1|9|A|926
9YPS|1|9|C|927
*
9YPS|1|9|G|1014
9YPS|1|9|U|1015
9YPS|1|9|U|1016
9YPS|1|9|U|1017

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain NN

Ribosomal protein S13

Chain bb

40S ribosomal protein S27