IL_9YPS_226
3D structure
- PDB id
- 9YPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 9YPS|1|9|G|970
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPS_226 not in the Motif Atlas
- Homologous match to IL_9H3G_202
- Geometric discrepancy: 0.1343
- The information below is about IL_9H3G_202
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_71972.2
- Basepair signature
- cWW-tSS-tSH-L-R-tHS-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9YPS|1|9|G|952
9YPS|1|9|C|953
9YPS|1|9|U|954
9YPS|1|9|A|955
9YPS|1|9|G|956
*
9YPS|1|9|C|967
9YPS|1|9|U|968
9YPS|1|9|U|969
9YPS|1|9|G|970
9YPS|1|9|G|971
9YPS|1|9|A|972
9YPS|1|9|C|973
9YPS|1|9|C|974
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BB
- 40S ribosomal protein S3a
- Chain OO
- Small ribosomal subunit protein uS11
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