IL_9YPS_260
3D structure
- PDB id
- 9YPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIb
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPS_260 not in the Motif Atlas
- Geometric match to IL_8CRE_469
- Geometric discrepancy: 0.2792
- The information below is about IL_8CRE_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73099.1
- Basepair signature
- cWW-cHW-L-R-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
9YPS|1|9|C|1708
9YPS|1|9|G|1709
9YPS|1|9|C|1710
9YPS|1|9|U|1711
*
9YPS|1|9|A|1822
9YPS|1|9|A|1823
9YPS|1|9|A|1824
9YPS|1|9|A|1825
9YPS|1|9|G|1826
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain 10
- MF mRNA
- Chain 12
- Transfer RNA; tRNA
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain XX
- uS12
- Chain ee
- 40S ribosomal protein S30
- Chain n
- eL41
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