IL_9YPT_025

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

9YPT|1|5|U|467, 9YPT|1|5|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|5|A|466
9YPT|1|5|U|467
9YPT|1|5|U|468
9YPT|1|5|C|469
9YPT|1|5|A|470
9YPT|1|5|A|471
9YPT|1|5|C|472
*
9YPT|1|5|G|682
9YPT|1|5|C|683
9YPT|1|5|G|684
9YPT|1|5|C|685
9YPT|1|5|A|686
9YPT|1|5|U|687
9YPT|1|5|U|688
9YPT|1|5|U|689

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain r

eL28