IL_9YPT_185

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPT_185 not in the Motif Atlas

Homologous match to IL_9PN5_146

Geometric discrepancy: 0.0615

The information below is about IL_9PN5_146

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_26092.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

29

Unit IDs

9YPT|1|9|C|49
9YPT|1|9|A|50
9YPT|1|9|U|51
*
9YPT|1|9|A|476
9YPT|1|9|G|477

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain YY

40S ribosomal protein S24

Chain jj

GTP-binding protein 1