IL_9YPT_186
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUAAG*CUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPT_186 not in the Motif Atlas
- Homologous match to IL_9PN5_147
- Geometric discrepancy: 0.1068
- The information below is about IL_9PN5_147
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61299.9
- Basepair signature
- cWW-cWH-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
9YPT|1|9|U|57
9YPT|1|9|C|58
9YPT|1|9|U|59
9YPT|1|9|A|60
9YPT|1|9|A|61
9YPT|1|9|G|62
*
9YPT|1|9|C|86
9YPT|1|9|U|87
9YPT|1|9|G|88
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain EE
- eS4 (S4 X isoform)
- Chain GG
- 40S ribosomal protein S6
- Chain YY
- 40S ribosomal protein S24
Coloring options: