IL_9YPT_192

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9YPT|1|9|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|9|G|145
9YPT|1|9|G|146
9YPT|1|9|A|147
9YPT|1|9|U|148
9YPT|1|9|A|149
9YPT|1|9|A|150
9YPT|1|9|C|151
*
9YPT|1|9|G|167
9YPT|1|9|C|168
9YPT|1|9|U|169
9YPT|1|9|A|170
9YPT|1|9|A|171
9YPT|1|9|U|172
9YPT|1|9|A|173
9YPT|1|9|C|174

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain GG

40S ribosomal protein S6

Chain W

eL24

Chain YY

40S ribosomal protein S24