IL_9YPT_235

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPT|1|9|G|1168
9YPT|1|9|G|1169
9YPT|1|9|A|1170
9YPT|1|9|G|1171
9YPT|1|9|U|1172
9YPT|1|9|A|1173
9YPT|1|9|U|1174
9YPT|1|9|G|1175
*
9YPT|1|9|U|1186
9YPT|1|9|G|1187
9YPT|1|9|A|1188
9YPT|1|9|A|1189
9YPT|1|9|A|1190
9YPT|1|9|C|1191

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain XX

uS12

Chain n

eL41