IL_9YPT_240
3D structure
- PDB id
- 9YPT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPT_240 not in the Motif Atlas
- Homologous match to IL_9H3G_214
- Geometric discrepancy: 0.0859
- The information below is about IL_9H3G_214
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_37129.1
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 57
Unit IDs
9YPT|1|9|G|1235
9YPT|1|9|G|1236
*
9YPT|1|9|C|1521
9YPT|1|9|A|1522
9YPT|1|9|C|1523
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain 13
- Transfer RNA; tRNA
- Chain PP
- uS19
- Chain SS
- uS13
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