IL_9YPT_249

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGG*UCUGUGA

Length

10 nucleotides

Bulged bases

9YPT|1|9|U|1494, 9YPT|1|9|G|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPT_249 not in the Motif Atlas

Homologous match to IL_9H3G_221

Geometric discrepancy: 0.0793

The information below is about IL_9H3G_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09439.2

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9YPT|1|9|U|1333
9YPT|1|9|G|1334
9YPT|1|9|G|1335
*
9YPT|1|9|U|1492
9YPT|1|9|C|1493
9YPT|1|9|U|1494
9YPT|1|9|G|1495
9YPT|1|9|U|1496
9YPT|1|9|G|1497
9YPT|1|9|A|1498

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain DD

Ribosomal protein S3

Chain KK

Small ribosomal subunit protein eS10

Chain UU

uS10

Chain dd

eS29