IL_9YPT_259

3D structure

PDB id

9YPT (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IIc

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPT_259 not in the Motif Atlas

Homologous match to IL_9H3G_231

Geometric discrepancy: 0.3001

The information below is about IL_9H3G_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01334.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

23

Unit IDs

9YPT|1|9|U|1560
9YPT|1|9|A|1561
9YPT|1|9|C|1562
*
9YPT|1|9|G|1573
9YPT|1|9|C|1574
9YPT|1|9|G|1575

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain TT

eS19