IL_9YPV_141

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

9YPV|1|5|G|4522, 9YPV|1|5|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPV_141 not in the Motif Atlas

Homologous match to IL_9PN5_103

Geometric discrepancy: 0.0734

The information below is about IL_9PN5_103

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30722.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9YPV|1|5|C|4456
9YPV|1|5|U|4457
9YPV|1|5|C|4458
*
9YPV|1|5|G|4520
9YPV|1|5|U|4521
9YPV|1|5|G|4522
9YPV|1|5|A|4523
9YPV|1|5|G|4524

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain V

Ribosomal protein L23