IL_9YPV_143

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPV_143 not in the Motif Atlas

Geometric match to IL_8GLP_149

Geometric discrepancy: 0.072

The information below is about IL_8GLP_149

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9YPV|1|5|C|4466
9YPV|1|5|A|4467
9YPV|1|5|U|4468
*
9YPV|1|5|G|4489
9YPV|1|5|C|4490
9YPV|1|5|G|4491

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain V

Ribosomal protein L23