IL_9YPV_148
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCAU*AGGCG
- Length
- 9 nucleotides
- Bulged bases
- 9YPV|1|5|C|4720
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPV_148 not in the Motif Atlas
- Homologous match to IL_9AXU_107
- Geometric discrepancy: 0.1286
- The information below is about IL_9AXU_107
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.4
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 45
Unit IDs
9YPV|1|5|C|4582
9YPV|1|5|C|4583
9YPV|1|5|A|4584
9YPV|1|5|U|4585
*
9YPV|1|5|A|4717
9YPV|1|5|G|4718
9YPV|1|5|G|4719
9YPV|1|5|C|4720
9YPV|1|5|G|4721
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain O
- Large ribosomal subunit protein uL13
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