IL_9YPV_191

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPV_191 not in the Motif Atlas

Geometric match to IL_8GLP_204

Geometric discrepancy: 0.1489

The information below is about IL_8GLP_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.5

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9YPV|1|9|C|188
9YPV|1|9|U|189
9YPV|1|9|G|190
9YPV|1|9|A|191
9YPV|1|9|C|192
*
9YPV|1|9|G|207
9YPV|1|9|G|208
9YPV|1|9|A|209
9YPV|1|9|U|210
9YPV|1|9|G|211

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain II

40S ribosomal protein S8