IL_9YPV_229
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPV_229 not in the Motif Atlas
- Homologous match to IL_9PN5_192
- Geometric discrepancy: 0.1186
- The information below is about IL_9PN5_192
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.4
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 38
Unit IDs
9YPV|1|9|C|1098
9YPV|1|9|G|1099
9YPV|1|9|A|1100
9YPV|1|9|U|1101
*
9YPV|1|9|G|1131
9YPV|1|9|C|1132
9YPV|1|9|A|1133
9YPV|1|9|G|1134
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain AA
- uS2 (SA)
- Chain BB
- 40S ribosomal protein S3a
- Chain NN
- Ribosomal protein S13
- Chain RR
- eS17
- Chain aa
- 40S ribosomal protein S26
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