IL_9YPV_233

3D structure

PDB id

9YPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

9YPV|1|9|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPV_233 not in the Motif Atlas

Homologous match to IL_9H3G_210

Geometric discrepancy: 0.0701

The information below is about IL_9H3G_210

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9YPV|1|9|G|1203
9YPV|1|9|A|1204
*
9YPV|1|9|U|1694
9YPV|1|9|A|1695
9YPV|1|9|C|1696

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain CC

Small ribosomal subunit protein uS5

Chain aa

40S ribosomal protein S26