IL_9YPW_154
3D structure
- PDB id
- 9YPW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGUAUG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 9YPW|1|5|U|4634, 9YPW|1|5|U|4636
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPW_154 not in the Motif Atlas
- Homologous match to IL_8GLP_318
- Geometric discrepancy: 0.2093
- The information below is about IL_8GLP_318
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_43276.1
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
9YPW|1|5|U|4632
9YPW|1|5|G|4633
9YPW|1|5|U|4634
9YPW|1|5|A|4635
9YPW|1|5|U|4636
9YPW|1|5|G|4637
*
9YPW|1|5|C|4662
9YPW|1|5|G|4663
9YPW|1|5|A|4664
9YPW|1|5|A|4665
9YPW|1|5|G|4666
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain W
- eL24
- Chain d
- eL31
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