IL_9YPY_001

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPY_001 not in the Motif Atlas

Homologous match to IL_5E81_376

Geometric discrepancy: 0.3677

The information below is about IL_5E81_376

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

9YPY|1|12|C|28
9YPY|1|12|A|29
9YPY|1|12|G|30
*
9YPY|1|12|C|40
9YPY|1|12|U|41
9YPY|1|12|G|42

Current chains

Chain 12

Phe-tRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain PP

uS19

Chain ee

40S ribosomal protein S30