IL_9YPY_081

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9YPY|1|5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPY|1|5|U|1957
9YPY|1|5|A|1958
9YPY|1|5|U|1959
9YPY|1|5|A|1960
9YPY|1|5|G|1961
9YPY|1|5|A|1962
9YPY|1|5|C|1963
9YPY|1|5|A|1964
9YPY|1|5|G|1965
*
9YPY|1|5|C|2022
9YPY|1|5|C|2023
9YPY|1|5|G|2024
9YPY|1|5|A|2025
9YPY|1|5|A|2026

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain m

Ubiquitin A-52 residue ribosomal protein fusion product 1