IL_9YPY_100
3D structure
- PDB id
- 9YPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ribosome with accommodated A-site tRNA, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 9YPY|1|5|U|2661, 9YPY|1|5|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPY_100 not in the Motif Atlas
- Homologous match to IL_8GLP_101
- Geometric discrepancy: 0.0497
- The information below is about IL_8GLP_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.4
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
9YPY|1|5|U|2656
9YPY|1|5|G|2657
9YPY|1|5|G|2658
9YPY|1|5|A|2659
9YPY|1|5|A|2660
9YPY|1|5|U|2661
9YPY|1|5|G|2662
*
9YPY|1|5|C|2672
9YPY|1|5|G|2673
9YPY|1|5|A|2674
9YPY|1|5|G|2675
9YPY|1|5|A|2676
9YPY|1|5|G|2677
9YPY|1|5|A|2678
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain NN
- Ribosomal protein S13
- Chain R
- Ribosomal protein L19
- Chain Z
- 60S ribosomal protein L27
- Chain c
- eL30
- Chain g
- Large ribosomal subunit protein eL34
- Chain p
- eL43
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