IL_9YPY_151
3D structure
- PDB id
- 9YPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ribosome with accommodated A-site tRNA, Structure V
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPY_151 not in the Motif Atlas
- Homologous match to IL_8GLP_159
- Geometric discrepancy: 0.0464
- The information below is about IL_8GLP_159
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34443.2
- Basepair signature
- cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9YPY|1|5|C|4596
9YPY|1|5|U|4597
9YPY|1|5|C|4598
9YPY|1|5|A|4599
9YPY|1|5|G|4600
9YPY|1|5|U|4601
9YPY|1|5|A|4602
9YPY|1|5|C|4603
*
9YPY|1|5|G|4608
9YPY|1|5|G|4609
9YPY|1|5|A|4610
9YPY|1|5|A|4611
9YPY|1|5|C|4612
9YPY|1|5|C|4613
9YPY|1|5|G|4614
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain H
- 60S ribosomal protein L9
- Chain V
- Ribosomal protein L23
- Chain m
- Ubiquitin A-52 residue ribosomal protein fusion product 1
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