IL_9YPY_153

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

9YPY|1|5|U|4634, 9YPY|1|5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPY|1|5|U|4632
9YPY|1|5|G|4633
9YPY|1|5|U|4634
9YPY|1|5|A|4635
9YPY|1|5|U|4636
9YPY|1|5|G|4637
*
9YPY|1|5|C|4662
9YPY|1|5|G|4663
9YPY|1|5|A|4664
9YPY|1|5|A|4665
9YPY|1|5|G|4666

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain W

eL24

Chain d

eL31