IL_9YPY_196

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

9YPY|1|9|U|361, 9YPY|1|9|C|399, 9YPY|1|9|C|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPY_196 not in the Motif Atlas

Homologous match to IL_9PN5_159

Geometric discrepancy: 0.1074

The information below is about IL_9PN5_159

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.7

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

8

Unit IDs

9YPY|1|9|U|359
9YPY|1|9|A|360
9YPY|1|9|U|361
9YPY|1|9|C|362
9YPY|1|9|A|363
9YPY|1|9|A|364
*
9YPY|1|9|U|396
9YPY|1|9|G|397
9YPY|1|9|A|398
9YPY|1|9|C|399
9YPY|1|9|C|400
9YPY|1|9|A|401
9YPY|1|9|C|402
9YPY|1|9|G|403

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain II

40S ribosomal protein S8

Chain LL

Ribosomal protein S11

Chain XX

uS12