IL_9YPY_209

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9YPY|1|9|A|628

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPY|1|9|G|611
9YPY|1|9|U|612
9YPY|1|9|G|613
9YPY|1|9|C|614
9YPY|1|9|C|615
9YPY|1|9|A|616
9YPY|1|9|G|617
*
9YPY|1|9|C|624
9YPY|1|9|G|625
9YPY|1|9|G|626
9YPY|1|9|U|627
9YPY|1|9|A|628
9YPY|1|9|A|629
9YPY|1|9|U|630
9YPY|1|9|U|631
9YPY|1|9|C|632

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 10

MF mRNA

Chain 12

Transfer RNA; tRNA

Chain DD

Ribosomal protein S3

Chain XX

uS12

Chain ee

40S ribosomal protein S30