IL_9YPY_226

3D structure

PDB id

9YPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome with accommodated A-site tRNA, Structure V

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9YPY|1|9|G|970

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPY_226 not in the Motif Atlas

Homologous match to IL_9H3G_202

Geometric discrepancy: 0.1268

The information below is about IL_9H3G_202

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_71972.2

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

12

Unit IDs

9YPY|1|9|G|952
9YPY|1|9|C|953
9YPY|1|9|U|954
9YPY|1|9|A|955
9YPY|1|9|G|956
*
9YPY|1|9|C|967
9YPY|1|9|U|968
9YPY|1|9|U|969
9YPY|1|9|G|970
9YPY|1|9|G|971
9YPY|1|9|A|972
9YPY|1|9|C|973
9YPY|1|9|C|974

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain BB

40S ribosomal protein S3a

Chain OO

Small ribosomal subunit protein uS11