IL_9YPZ_038

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPZ_038 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.1721

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

9YPZ|1|5|G|1074
9YPZ|1|5|G|1075
9YPZ|1|5|C|1076
*
9YPZ|1|5|G|1234
9YPZ|1|5|G|1235
9YPZ|1|5|C|1236

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain E

60S ribosomal protein L6

Chain K

60S ribosomal protein L7

Chain b

Large ribosomal subunit protein eL29