IL_9YPZ_088
3D structure
- PDB id
- 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 1, Structure Ia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPZ_088 not in the Motif Atlas
- Homologous match to IL_8GLP_300
- Geometric discrepancy: 0.0511
- The information below is about IL_8GLP_300
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9YPZ|1|5|G|2358
9YPZ|1|5|U|2359
9YPZ|1|5|A|2360
9YPZ|1|5|G|2361
9YPZ|1|5|U|2362
9YPZ|1|5|A|2363
9YPZ|1|5|G|2364
*
9YPZ|1|5|C|3858
9YPZ|1|5|G|3859
9YPZ|1|5|A|3860
9YPZ|1|5|A|3861
9YPZ|1|5|A|3862
9YPZ|1|5|C|3863
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain P
- Large ribosomal subunit protein uL22
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