IL_9YPZ_139

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

9YPZ|1|5|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPZ_139 not in the Motif Atlas

Homologous match to IL_9H3G_119

Geometric discrepancy: 0.0823

The information below is about IL_9H3G_119

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36931.4

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

25

Unit IDs

9YPZ|1|5|G|4405
9YPZ|1|5|U|4406
9YPZ|1|5|G|4407
*
9YPZ|1|5|U|4435
9YPZ|1|5|U|4436
9YPZ|1|5|U|4437
9YPZ|1|5|U|4438
9YPZ|1|5|U|4439

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain I

60S ribosomal protein L10