IL_9YPZ_142
3D structure
- PDB id
- 9YPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 1, Structure Ia
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUC*GUGAG
- Length
- 8 nucleotides
- Bulged bases
- 9YPZ|1|5|G|4522, 9YPZ|1|5|A|4523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YPZ_142 not in the Motif Atlas
- Homologous match to IL_9PN5_103
- Geometric discrepancy: 0.0549
- The information below is about IL_9PN5_103
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30722.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 20
Unit IDs
9YPZ|1|5|C|4456
9YPZ|1|5|U|4457
9YPZ|1|5|C|4458
*
9YPZ|1|5|G|4520
9YPZ|1|5|U|4521
9YPZ|1|5|G|4522
9YPZ|1|5|A|4523
9YPZ|1|5|G|4524
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain V
- Ribosomal protein L23
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