IL_9YPZ_209

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9YPZ|1|9|A|628, 9YPZ|1|9|U|630, 9YPZ|1|9|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9YPZ|1|9|G|611
9YPZ|1|9|U|612
9YPZ|1|9|G|613
9YPZ|1|9|C|614
9YPZ|1|9|C|615
9YPZ|1|9|A|616
9YPZ|1|9|G|617
*
9YPZ|1|9|C|624
9YPZ|1|9|G|625
9YPZ|1|9|G|626
9YPZ|1|9|U|627
9YPZ|1|9|A|628
9YPZ|1|9|A|629
9YPZ|1|9|U|630
9YPZ|1|9|U|631
9YPZ|1|9|C|632

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain 10

MF mRNA

Chain DD

Ribosomal protein S3

Chain XX

uS12

Chain ee

40S ribosomal protein S30