IL_9YPZ_257

3D structure

PDB id

9YPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 1, Structure Ia

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YPZ_257 not in the Motif Atlas

Homologous match to IL_9H3G_231

Geometric discrepancy: 0.3138

The information below is about IL_9H3G_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01334.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

23

Unit IDs

9YPZ|1|9|U|1560
9YPZ|1|9|A|1561
9YPZ|1|9|C|1562
*
9YPZ|1|9|G|1573
9YPZ|1|9|C|1574
9YPZ|1|9|G|1575

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain TT

eS19