IL_9YQ0_035
3D structure
- PDB id
- 9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 2, Structure Ib
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCCG*CCCG
- Length
- 8 nucleotides
- Bulged bases
- 9YQ0|1|5|C|738, 9YQ0|1|5|C|738|||A, 9YQ0|1|5|C|924, 9YQ0|1|5|C|925
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YQ0_035 not in the Motif Atlas
- Geometric match to IL_8B0X_156
- Geometric discrepancy: 0.2771
- The information below is about IL_8B0X_156
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.4
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 22
Unit IDs
9YQ0|1|5|C|737
9YQ0|1|5|C|738
9YQ0|1|5|C|738|||A
9YQ0|1|5|G|739
*
9YQ0|1|5|C|923
9YQ0|1|5|C|924
9YQ0|1|5|C|925
9YQ0|1|5|G|926
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain M
- 60S ribosomal protein L14
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