IL_9YQ0_102
3D structure
- PDB id
- 9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Vacant ribosome with P-site tRNA, substate 2, Structure Ib
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAA*UC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9YQ0_102 not in the Motif Atlas
- Geometric match to IL_8GLP_304
- Geometric discrepancy: 0.0418
- The information below is about IL_8GLP_304
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.4
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 36
Unit IDs
9YQ0|1|5|G|2847
9YQ0|1|5|G|2848
9YQ0|1|5|A|2849
9YQ0|1|5|A|2850
*
9YQ0|1|5|U|3840
9YQ0|1|5|C|3841
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain V
- Ribosomal protein L23
Coloring options: