IL_9YQ0_115

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YQ0_115 not in the Motif Atlas

Geometric match to IL_8GLP_124

Geometric discrepancy: 0.0538

The information below is about IL_8GLP_124

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24886.5

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

14

Unit IDs

9YQ0|1|5|G|3780
9YQ0|1|5|C|3781
*
9YQ0|1|5|G|3811
9YQ0|1|5|C|3812
9YQ0|1|5|A|3813
9YQ0|1|5|U|3814

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 13

Transfer RNA; tRNA

Chain n

eL41