IL_9YQ0_141

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

9YQ0|1|5|A|4518, 9YQ0|1|5|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YQ0_141 not in the Motif Atlas

Homologous match to IL_9PN5_104

Geometric discrepancy: 0.0862

The information below is about IL_9PN5_104

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.4

Basepair signature

cWW-cWW

Number of instances in this motif group

22

Unit IDs

9YQ0|1|5|C|4458
9YQ0|1|5|U|4459
*
9YQ0|1|5|A|4517
9YQ0|1|5|A|4518
9YQ0|1|5|C|4519
9YQ0|1|5|G|4520

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein L3

Chain O

Large ribosomal subunit protein uL13

Chain V

Ribosomal protein L23