IL_9YQ0_177

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAA*UCGA

Length

7 nucleotides

Bulged bases

9YQ0|1|8|G|94

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YQ0_177 not in the Motif Atlas

Homologous match to IL_8GLP_187

Geometric discrepancy: 0.05

The information below is about IL_8GLP_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30722.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

20

Unit IDs

9YQ0|1|8|U|64
9YQ0|1|8|A|65
9YQ0|1|8|A|66
*
9YQ0|1|8|U|92
9YQ0|1|8|C|93
9YQ0|1|8|G|94
9YQ0|1|8|A|95

Current chains

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain Y

uL24

Chain h

eL35

Chain j

Ribosomal protein L37