IL_9YQ0_249

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

9YQ0|1|9|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YQ0_249 not in the Motif Atlas

Geometric match to IL_8GLP_337

Geometric discrepancy: 0.109

The information below is about IL_8GLP_337

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37443.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

11

Unit IDs

9YQ0|1|9|C|1395
9YQ0|1|9|A|1396
9YQ0|1|9|U|1397
9YQ0|1|9|G|1398
9YQ0|1|9|C|1399
*
9YQ0|1|9|G|1447
9YQ0|1|9|A|1448
9YQ0|1|9|G|1449
9YQ0|1|9|G|1450

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain QQ

uS9

Chain RR

eS17

Chain UU

uS10

Chain gg

RACK1