IL_9YQ0_250

3D structure

PDB id

9YQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Vacant ribosome with P-site tRNA, substate 2, Structure Ib

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

9YQ0|1|9|C|1403, 9YQ0|1|9|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9YQ0_250 not in the Motif Atlas

Homologous match to IL_9H3G_226

Geometric discrepancy: 0.1534

The information below is about IL_9H3G_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.4

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

4

Unit IDs

9YQ0|1|9|A|1402
9YQ0|1|9|C|1403
9YQ0|1|9|U|1404
9YQ0|1|9|A|1405
*
9YQ0|1|9|U|1441
9YQ0|1|9|U|1442
9YQ0|1|9|C|1443
9YQ0|1|9|U|1444

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain QQ

uS9

Chain UU

uS10

Chain gg

RACK1